Monday 14 April |
||
9:00-9:30 |
Kim Henrick |
Practicalities:
EBI facilities, practical issues with validation software |
9:30-9:45 |
Randy Read |
Review of
goals: validation criteria, presentation of results, report to PDB,
publication of conclusions |
9:45-10:00 |
|
Discussion
of goals, composition of groups |
10:00-10:15 |
Eugene Krissinel |
Validation
of crystal packing interactions |
10:15-10:30 |
Will Sheffler |
Validation
by Rosetta packing analysis |
10:30-11:00 |
coffee |
|
11:00-11:15 |
Jane
Richardson |
Molprobity clashscore |
11:15-11:45 |
|
Discussion:
modern tools for packing analysis |
11:45-12:30 |
|
Computing
workshop and discussion in groups |
12:30-14:00 |
lunch |
|
14:00-15:30 |
|
Computing
workshop and discussion in groups |
15:30-16:00 |
tea |
|
16:00-16:15 |
Zbyszek Otwinowski |
Statistical
properties of coordinate files (e.g.
|
16:15-16:30 |
Tassos Perrakis |
Statistical
properties of structure factor files |
16:30-16:45 |
Paul Adams |
Structure
factor validation in phenix.xtriage |
16:45-17:00 |
Randy Read |
Validating
structure factor distributions |
17:00-17:30 |
|
Discussion:
new statistical measures for validation |
Tuesday 15 April |
||
9:00-9:15 |
Gerard Kleywegt |
Integrating
EDS into PDB validation |
9:15-9:30 |
Paul Emsley |
Displaying
local validation results in coot |
9:30-9:45 |
|
Discussion: how
to present local validation results |
9:45-10:00 |
Jane
Richardson |
Lead
discussion on procedures for incorporating new validation measures |
10:00-10:15 |
Axel Brunger |
Special
demands of validation at low resolution |
10:15-10:45 |
coffee |
|
10:45-12:30 |
|
Computing
workshop and discussion in groups |
12:30-14:00 |
lunch |
|
14:00-14:15 |
Thomas Lutteke |
Carbohydrate
validation |
14:15-14:30 |
Gerard Kleywegt |
HicUp and ValLigURL |
14:30-14:45 |
|
Discussion:
issues of non-protein components |
14:45-15:00 |
Robbie Joosten |
Re-refinement
as a validation tool |
15:00-15:15 |
Paul Adams |
Bulk solvent
and other features of re-refinement |
15:15-15:30 |
|
Discussion:
should re-refinement be part of PDB validation, on deposition and thereafter? |
15:30-16:00 |
tea |
|
16:00-17:30 |
|
Computing workshop
and discussion in groups |
Wednesday 15 April |
|
9:00-10:30 |
Discussion:
which validation tools and criteria should be used? |
10:30-11:00 |
coffee |
11:00-12:30 |
Discussion:
presenting results to depositors and users |
12:30-14:00 |
lunch |
14:00-15:30 |
Discussion: recommendations
of workshop for |